feat(system): seedgo v2 operational, full system audit, 14/15 branches at 99%

Three days of intensive work bringing seedgo to full operational status
and driving all branches through comprehensive standards compliance.

Seedgo v2.0.0:
- 22 checkers active (up from 20), standards pack fully operational
- New introspection standard researched from Dev-Pass, FPLAN-0017 open
- Bypass system for false positives (.seedgo config)
- Standards query and audit commands fully functional

System-wide audit (FPLAN-0016):
- All 14 auditable branches at 99%+ compliance
- CLI imports standardized across all branches (console from cli.apps.modules)
- handle_command(command, args) → bool contract added to all modules
- print_help() function naming fixed for checker pattern matching
- Handler extraction: large modules split, file I/O moved to handler layer
- New handlers created across ai_mail, backup, daemon, flow, skills, spawn, seedgo

Branch-specific highlights:
- ai_mail: email.py split 840→420 lines, 4 new handlers
- flow: dplan_flow.py 688→591 lines, 4 new handlers
- seedgo: massive restructure — standards moved to handlers/aipass_standards/,
  old standards/ tree removed, bypass system added, diagnostics module
- commons: database module added, CLI imports fixed
- skills: 5 handle_commands added, help function renamed
- trigger: error reporter handler, handle_command routing
- All branches: consistent architecture, clean drone routing

Culture doc (CLAUDE.md) added — documents AIPass philosophy, identity,
memory system, and collaboration principles.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/aipass/api/apps/handlers/usage/aggregation.py

@@ -1,14 +1,9 @@
-
-# ===================AIPASS====================
-# META DATA HEADER
-# Name: aggregation.py - Usage Aggregation Handler
-# Date: 2025-11-15
+# =================== AIPass ====================
+# Name: aggregation.py
+# Description: Usage Aggregation Handler
 # Version: 1.0.0
-# Category: api/handlers/usage
-#
-# CHANGELOG (Max 5 entries):
-#   - v1.0.0 (2025-11-15): Initial handler - usage stats aggregation
-#   - v1.1.0 (2025-11-16): Extracted aggregation logic from archive
+# Created: 2025-11-15
+# Modified: 2025-11-15
 # =============================================
 
 """

src/aipass/api/apps/handlers/usage/cleanup.py

@@ -1,20 +1,10 @@
-
-# ===================AIPASS====================
-# META DATA HEADER
-# Name: cleanup.py - Usage data retention and cleanup
-# Date: 2025-11-16
+# =================== AIPass ====================
+# Name: cleanup.py
+# Description: Usage data retention and cleanup
 # Version: 0.1.0
-# Category: api/handlers
-#
-# CHANGELOG (Max 5 entries):
-#   - v0.1.0 (2025-11-16): Extracted from api_usage.py
-#   - v1.0.0 (2025-11-15): Initial handler - old data cleanup
-#
-# CODE STANDARDS:
-#   - Handler layer (standalone functions)
-#   - Uses CLI service for output
-#   - Under 300 lines
-# ==============================================
+# Created: 2025-11-16
+# Modified: 2025-11-16
+# =============================================
 
 """
 Usage Data Cleanup Handler
@@ -32,8 +22,8 @@ import json
 from datetime import datetime, timedelta
 from typing import Optional, Dict, List
 
-# CLI services
-from aipass.cli.apps.modules import console, success, warning
+# Logging
+from aipass.prax import logger
 
 
 def _read_json(file_path: Path) -> Optional[Dict]:
@@ -99,13 +89,13 @@ def cleanup_old_data(data_file_path: Path, retention_days: int = 30) -> int:
 
         _write_json(data_file_path, data)
         # logger.info(f"Cleaned up {len(old_generations)} generation entries")
-        success(f"Cleaned up {len(old_generations)} generation entries older than {retention_days} days")
+        logger.info(f"Cleaned up {len(old_generations)} generation entries older than {retention_days} days")
 
         return len(old_generations)
 
     except Exception as e:
         # logger.error(f"Cleanup failed: {e}")
-        console.print(f"[red]Cleanup failed: {e}[/red]")
+        logger.error(f"Cleanup failed: {e}")
         raise
 
 
@@ -162,13 +152,13 @@ def cleanup_daily_totals(data_file_path: Path, retention_days: int = 90) -> int:
 
         _write_json(data_file_path, data)
         # logger.info(f"Cleaned up {len(old_dates)} daily total entries")
-        success(f"Cleaned up {len(old_dates)} daily total entries older than {retention_days} days")
+        logger.info(f"Cleaned up {len(old_dates)} daily total entries older than {retention_days} days")
 
         return len(old_dates)
 
     except Exception as e:
         # logger.error(f"Daily totals cleanup failed: {e}")
-        console.print(f"[red]Daily totals cleanup failed: {e}[/red]")
+        logger.error(f"Daily totals cleanup failed: {e}")
         raise
 
 
@@ -190,7 +180,7 @@ def auto_cleanup(data_file_path: Path, config: Optional[Dict] = None) -> Dict[st
 
     except Exception as e:
         # logger.error(f"Auto cleanup failed: {e}")
-        console.print(f"[red]Auto cleanup failed: {e}[/red]")
+        logger.error(f"Auto cleanup failed: {e}")
         raise
 
 

src/aipass/api/apps/handlers/usage/tracking.py

@@ -1,13 +1,9 @@
-
-# ===================AIPASS====================
-# META DATA HEADER
-# Name: tracking.py - Usage Tracking Handler
-# Date: 2025-11-16
+# =================== AIPass ====================
+# Name: tracking.py
+# Description: Usage Tracking Handler
 # Version: 1.0.0
-# Category: api/handlers/usage
-#
-# CHANGELOG (Max 5 entries):
-#   - v1.0.0 (2025-11-16): Extracted tracking logic from archive
+# Created: 2025-11-16
+# Modified: 2025-11-16
 # =============================================
 
 """